Gaps #87143
openGaps #86698: HUMS T.H.I.S GAP Analysis
Gaps #87377: GAPS > LAB > THIS
MIS Report: To generate statistics on dominant organisms - Microbiology
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Description
MIS REPORT
Report Name: Dominant Organism Analysis Report
Search Criteria
| Filter | Control | Remarks |
| Unit | Dropdown | Default value: Hospital Universiti Malaysia Sabah (HUMS). Data shall be retrieved based on the selected unit. |
| Ward | Dropdown | Populate ward list based on patient ward/location master. Include "All" option.Searchable. |
| From Collection Date | Date Picker | Culture specimen collection start date. |
| To Collection Date | Date Picker | Culture specimen collection end date. |
| Specimen Type | Multi-select Dropdown | Populate from Microbiology Specimen Type Master. Include "All" option. Searchable |
| Source Type | Multi-select Dropdown | Populate based on patient encounter category (ER, Inpatient, Outpatient, Day Care). Include "All" option. |
| Bacteria | Optional Search | Optional searchable field to filter by identified organism/bacteria name. |
| Show Report | Button | Generate report based on selected criteria. |
Screen Layout:
Output Grid
| Bacteria | Specimen Type | Source Type | Unit | Ward | No. of Isolates |
Sorting
Default sorting:
No. of Isolates: DECREASING ORDER (Highest isolate count appears first.)
- Number of Isolates Report
Data Inclusion Criteria
Only finalized positive microbiology culture results shall be included in the report.
The report shall include only culture results with an identified organism.
Data Exclusion Criteria
The following results shall be excluded from the report:
- Negative cultures
- No Growth cultures
- Pending cultures
- No Organism Seen
- No Fungal Elements Seen
- Growth In Progress – Pending Identification
- No Growth After 5 Days of Incubation
- So Far No Growth After 5 Days of Incubation
- So Far No Growth After 4 Days of Incubation
- So Far No Growth After 3 Days of Incubation
- So Far No Growth After 48 Hours of Incubation
- So Far No Growth After 24 Hours of Incubation
- No Significant Growth, Normal Flora
- No Pathogen Isolated
- Non-Significant Pathogen Isolated
- No Enterobacteriae Pathogen Isolated
- No Salmonella, Shigella or Vibrio Isolated
- No Vibrio Cholerae Isolated
Isolate Definition
A unique isolate shall be identified based on the combination of:
- Patient
- Organism Name
- Specimen Type
- Collection Date
The following rules shall apply:
- Multiple positive culture results for the same patient, organism, specimen type, and collection date shall be counted as one (1) isolate.
- Positive culture results for the same patient, organism, and specimen type collected on different collection dates shall be counted as separate isolates.
- Positive culture results from different specimen types shall be counted as separate isolates, regardless of collection date.
*Calculation Formula
*
Number of Isolates = Total Count of Unique Isolates
Where:
Unique Isolate = Patient + Organism Name + Specimen Type + Collection Date
Report Output
The report shall display the Number of Isolates summarized by:
- Organism Name
- Specimen Type
- Source Type
- Ward
Results shall be displayed in descending order based on the Number of Isolates.
Sample output grid image: 
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